Data Access & Downloads
ARTS-DB 2.01 is committed to open data accessibility. Below, you can find the complete datasets used to power our exploration engines. These files allow researchers to perform offline analyses, integrate our curated data into their pipelines, or reproduce the database locally.
1. Core Databases (SQLite)
Complete SQL tables containing all results and hits from the “Search” option. Ideal for local SQL queries.
| Domain | File Content | Format | Size | Date | Action |
|---|---|---|---|---|---|
| Bacteria | Complete SQL tables for 35,681 bacterial genomes. | .db.zip | ~531 MB (~3.2 GB Unzipped) | 08.12.2025 | Download |
| Fungi | Complete SQL tables for 6,406 fungal genomes. | .db.zip | ~285 MB (~1.8 GB Unzipped) | 08.12.2025 | Download |
2. Model-Oriented Analysis Data
Precomputed target profiles used in the "Model-Oriented Search" module. Contains model-specific mining scores.
| Domain | File Content | Format | Size | Date | Action |
|---|---|---|---|---|---|
| Bacteria | Target profiles and mining scores. | .json.zip | ~54 MB (~536 MB Unzipped) | 08.12.2025 | Download |
| Fungi | Target profiles and mining scores. | .json.zip | ~35 MB (~333 MB Unzipped) | 08.12.2025 | Download |
3. External Database Mappings
Cross-reference files linking ARTS/FunARTS models to UniProt, ChEMBL, MIBiG, DrugBank, and DrugCentral.
| Domain | File Content | Format | Size | Date | Action |
|---|---|---|---|---|---|
| Bacteria | Mappings to External DBs. | .json | ~623 KB | 27.10.2025 | Download |
| Fungi | Mappings to External DBs. | .json | ~44 KB | 27.10.2025 | Download |
License & Citation:
All data provided here is available under the CC-BY 4.0 License. If you use this data in your research, please cite: PAPER LINK HERE.
All data provided here is available under the CC-BY 4.0 License. If you use this data in your research, please cite: PAPER LINK HERE.